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6 Most Recommended Accounting Software for Ecommerce Business

6 Most Recommended Accounting Software for Ecommerce Business

Starting up an Ecommerce Business is already a task that takes up a lot of your time. With additional tasks like accounting and bookkeeping, that too manually, accounting software become important for the ecommerce sellers.

Thinking about the accounting software can become scary as it would mean increased cost. However, not all the accounting software leaves your pockets empty as they come at affordable rates. One can even get the free software, but it might not include all the advanced features. Based on the needs of the business, one can decide whether they need all the features or not.

But the question still remains on which one is the right accounting software for their ecommerce business? Because mostly all the software come with the basic features.

Here, we have enlisted the top 6 picks of accounting software for ecommerce business as suggested by our experts.


If you have already searched for the best accounting software, then we are sure that you have already saw the name QuickBooks. It is because QuickBooks has been known for providing various solutions to manage cash and taxes. It has a user-friendly interface which makes it easy for you to grasp to it faster. Moreover, it has integrated third-party tools to facilitate the ecommerce business.

QuickBooks allow options for all business sizes regardless of their scale of expansion. You can choose either the desktop version (to keep the data more secured) or the online version to utilize it from anywhere across countries. It helps in tracking expenses, managing balance sheets, tracking inventory, invoicing, and a wide range of business essentials available at a single place. You can start with $30 a month plan to get functions like billing, income tracking, and running reports. The good part is that two accountants can access QuickBooks at a time.

Zoho Books

The accounting software, Zoho Books, was introduced as a part of Zoho Cloud-Based Business Suite. It has easy to understand and use features of online accounting software. There are many in-built tools as well as other financial support services which make it one of the best accounting software for ecommerce business. It allows easy automation of activities and can be used for invoicing, handling expenses, making estimates, managing purchase orders, and so on.

It also comes with a client portal and a vendor portal to ease the customer-supplier management. A business earning up to $50,000 per year , can start with the free plan, while others can go for the advanced features in the paid plan for $15/month billed annually.


Looking for the accounting software which allows you to use multiple credit cards and bank accounts? Well the, Wave is the right choice. This software allows you to connect as many credit cards or bank accounts you wish while keeping an easy track of your finances. It is surely one of the best accounting software pick for ecommerce businesses as it offers free income and expenses tracking. In case you are a running your ecommerce business on Shopify, Wave allows a direct integration process too.

Moreover, it charges no extra penny to scan receipts or invoicing. However, if you want your customers to pay the amount directly through the invoices, there is an additional charge. It also charges for the payroll.


Xero is yet another great software for ecommerce accounting and gives a tough competition to QuickBooks when it comes to money. It comes with varied features, benefitting the different needs of the company irrespective of the business size. There are three plans in Xero to provide scaling up features for small-sized to mid-sized ecommerce businesses at affordable rates.

Moreover, there is no limit to the users even if you are using a low cost plan so the businesses can appoint multiple individuals or share the software with different departments. It also comes with a live bank feature where you can constantly track the feeds and make bank reconciliations. It allows you to have a consistent money track system.

If you choose to go with the pro version and pay higher amounts, you will be able to unlock more features related to the invoicing and produce more quotes. These plans also provide the feature which eases the dealing between multiple currencies. Thus, it is surely one of the best accounting software for ecommerce business that wants to scale its operations worldwide

Sage 50 Cloud

If money is not a barrier and all you are looking for an overall support software which goes hands in hand with your business growth, then you can go with Sage. Despite the cloud in the name, Sage isnโ€™t really cloud based accounting software. It can also be operated through the desktop via the hard-drive based software to get the reports easily integrated.

Sage 50 comes in handy if your ecommerce business includes managing a lot of inventory because it offers tools for that. It facilitates in expanding the growth options for ecommerce businesses. In addition to this, Sage is an excellent choice for the businesses which have employees working remotely.

However, the interface is not as easy as the competitor software as it has traits like links getting opened in separate windows making it a busy interface. Although there are customization options available for invoicing, maintaining detailed records, the lack of mobility it can get tricky for small businesses.


Not all good software are cheap, and NetSuite is one of them. Other than the costing problem, NetSuite can be proved to be great option for the big companies. It offer various plans and offers for niche businesses and this is its USP. It comes with tools that helps you in building good customer relationship and manage it well which makes it stand proud among the competition. The reports provided by NetSuite are easy to understand making it perfect for the beginners too.

As an accounting software for ecommerce business, NetSuite is the right choice when they need specific solutions. It has a simpler dashboard as compared to complex accounting softwares which makes it perfect for the businesses who hate navigating through bars. Whether it is invoicing, making financial reports, or other important tools to keep your expenses tracked, NetSuite has it all. It may seem confusing in the beginning but if you are looking for a robust accounting software then this is your solution.


Before finalizing software for your ecommerce business, we suggest you to look out for the following points too:

  1. What is the payment option? Make sure that it is feasible for you to pay the software cost.
  2. If it integrates with your ecommerce platform well? There is no use of getting a software, if it doesnโ€™t integrate with your business and you have to do it manually.
  3. Is it easy to work on the software? It is important to check whether you can understand and work on the software well if you want to handle your accounts on your own. If you are going to hire an accountant, then they can make the software suggestion themselves.

Accounting software is crucial for any business, whether ecommerce or other, that is seeking growth and wants to save as much as possible. Therefore, you must try to get proper information on the software and what suits your business the best. You can also check what ecommerce accounting tasks include to get a better idea.


Written by โ€“ Priyanka Rampal


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